openmolecules.org

 
Home » DataWarrior » Functionality » search for conformers, empty column «minimization error»
search for conformers, empty column «minimization error» [message #1545] Thu, 17 March 2022 21:13 Go to previous message
nbehrnd is currently offline  nbehrnd
Messages: 224
Registered: June 2019
Senior Member
Dear Thomas,

using DataWarrior to generate conformers (chemistry -> generate conformers), I notice the presence of a fifth column to report «minimization errors». So far, I did not met a run with a run where one of the entries were marked by a categorical warning, or a real number against a reference value (if the later, what would be the critical threshold). The chapter «Chemistry in 3D» of the help doesn't provide additional documentation about this. So, what is the anticipated user scenario where this assists the user?

The observation refers to DW 5.5.0 for Linux/Mac including the development updates by 2022-03-14.

Thank you,

Norwid

(Exporting these results as a text file typically yields /two/ tabulators prior to the anticipated line feed, which once was unexpected for an AWK script down the road; one for the empty column, one for the general format of the record lines.)

[Updated on: Thu, 17 March 2022 21:13]

Report message to a moderator

 
Read Message
Read Message
Previous Topic: Comparing Structure Files
Next Topic: defining molecule clusters after similarity analysis
Goto Forum:
  


Current Time: Thu Nov 21 23:45:58 CET 2024

Total time taken to generate the page: 0.03488 seconds