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Re: Importing compounds with assay data from Pubchem into Datawarrior [message #1357 is a reply to message #1355]

Fri, 23 July 2021 18:39

Jo W
Messages: 37
Registered: July 2021

Member

Hi Thomas
Thanks for your efforts. Are you saying that you could download the bioassay csv files or just the substance / chemical files? The latter I can download and open in DW. The former - they dont download at all.

Can you confirm its biodata that you could download ( e.g section 3 Chemicals and Bioactivities 3.1 Tested Compounds https://pubchem.ncbi.nlm.nih.gov/protein/P10633#section=Chem icals-and-Bioactivities Wink

?
See attached file for exact location of the csv file on Pubchem (circled in red) -= this "download Button" doesnt work for me.

Aso the url import in DW - are you saying this cant be used either for Pubchem urls?

Perhaps other members of the forum have found ways to specifically download Pubchem compounds/substance WITH bioassay data In the same csv file Wink

and could share how they did that and uploaded it into Data warrior?
Many thanks in advance
jon

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[Message index]

		Importing compounds with assay data from Pubchem into Datawarrior By: Jo W on Fri, 23 July 2021 13:12
		Re: Importing compounds with assay data from Pubchem into Datawarrior By: thomas on Fri, 23 July 2021 15:17
		Re: Importing compounds with assay data from Pubchem into Datawarrior By: Jo W on Fri, 23 July 2021 18:39
		Re: Importing compounds with assay data from Pubchem into Datawarrior By: Jo W on Sun, 25 July 2021 17:18
		Re: Importing compounds with assay data from Pubchem into Datawarrior By: nbehrnd on Mon, 26 July 2021 21:55
		Re: Importing compounds with assay data from Pubchem into Datawarrior By: thomas on Thu, 19 August 2021 20:56
		Re: Importing compounds with assay data from Pubchem into Datawarrior By: YTWu on Thu, 10 February 2022 11:07

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