openmolecules.org

 
Home » DataWarrior » Functionality » Calculating similarity to one query compound (molecular similarity)
Re: Calculating similarity to one query compound [message #1889 is a reply to message #63] Mon, 01 May 2023 15:48 Go to previous messageGo to previous message
rkp@23 is currently offline  rkp@23
Messages: 3
Registered: April 2023
Junior Member
I have a question about ID-Code.
Are ID-code and SMARTS inter-convertible?
For example, if I want to convert SMARTS string to an ID-code or vice-versa, are there any method within DataWarrior that can do that?

I am asking specifically for macros and editing them outside DataWarrior.
I want to provide reaction SMARTS as SMARTS string in the macro specification , as well as reactant 0 and 1 as SMILES/SMARTS, but I see that Macros are written out with ID-codes rather than SMARTS string.

My goal is to prepare a macro outside DataWarrior: provide required reaction SMARTS, reactants for combinatorial library generation , as a SMARTS/SMILES string, may be using shell variable or python. I would like to get a Macro document, with those SMARTS string converted to ID-code, which DataWaarrior can now work on.

Has anybody tried this before?
Let me know
 
Read Message
Read Message
Read Message
Read Message
Previous Topic: Add reaction from structure
Next Topic: 'Search ChEMBL Database' function
Goto Forum:
  


Current Time: Tue May 14 10:07:47 CEST 2024

Total time taken to generate the page: 0.04287 seconds