| network file export (cytoscape) [message #576] |
Fri, 14 June 2019 06:37  |
neococo
Messages: 1
Registered: June 2019
Location: TX
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Junior Member |
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Datawarrior is amazingly fast for structural clustering compared to tools like clustervis2 within Cytoscape. Also the activity-cliff analysis is very useful. However, I would still like to be able to export the SALI plot/network that is generated in datawarrior for easy transition to cytoscape.
I tried to use the exported tables to do this, and maybe I will eventually be able to when I learn how to manipulate cytoscape better, but until then, is there a straightforward way to export a file that contains the nodes and edge data from datawarrior?
Thank you!
Mike
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| Re: network file export (cytoscape) [message #580 is a reply to message #576] |
Mon, 24 June 2019 17:04  |
nbehrnd
Messages: 224
Registered: June 2019
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Senior Member |
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Dear Mike,
just about the plots: I found saving the 2D maps, especially if annotated by a label (e.g., frequency
count) or / and especially with a structure depiction (e.g., one of a scaffolds) next to the markers
perferably exported as .svg. and subsequently rewritten with cairosvg as .pdf (https://cairosvg.org/).
Norwid
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