openmolecules.org Forum: Functionality » Opening SDF file with Datawarrior from command line

Home » DataWarrior » Functionality » Opening SDF file with Datawarrior from command line

Show: Today's Messages :: Polls :: Message Navigator

Re: Opening SDF file with Datawarrior from command line [message #411 is a reply to message #409]

Tue, 30 October 2018 22:23

thomas
Messages: 731
Registered: June 2014

Senior Member

This you can do. I just tried on Linux:
/opt/datawarrior/datawarrior some_path/some_file.sdf

On Windows I didn't try, but it should work the same way.
On the Mac it is different. The command line argument is evidently not passed to the jar file. As a workaround you may launch the jar the classical way: java -cp datawarrior.jar:lib1.jar:lib2.jar...libn.jar pathAndFile.sdf (in the jar list you include all jar files from the /Applications/DataWarrior.App/DataWarrior/Contents/Java folder)

The same way you may pass a macro file instead of an sd-file. The macro may contain tasks to load an sd-file, to do some other processing and to finally end DataWarrior itself. This way you could add some more stuff in a bash script.

Thomas

Report message to a moderator

[Message index]

		Opening SDF file with Datawarrior from command line By: abc123 on Tue, 30 October 2018 17:26
		Re: Opening SDF file with Datawarrior from command line By: thomas on Tue, 30 October 2018 22:23
		Re: Opening SDF file with Datawarrior from command line By: abc123 on Wed, 31 October 2018 00:32
		Re: Opening SDF file with Datawarrior from command line By: thomas on Sun, 04 November 2018 00:33
		Re: Opening SDF file with Datawarrior from command line By: nbehrnd on Thu, 20 June 2019 12:46

Previous Topic:	Datawarrior Protonates the Oxygen in a Phosphorous Oxygen Double Bond.
Next Topic:	network file export (cytoscape)

Goto Forum:

-=] Back to Top [=-

[ Syndicate this forum (XML) ] [

] [

]

Current Time: Sat Jul 05 05:41:28 CEST 2025

Total time taken to generate the page: 0.06554 seconds