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Re: Out of memory [message #2399 is a reply to message #2396]

Mon, 17 March 2025 20:52

thomas
Messages: 747
Registered: June 2014

Senior Member

25'000 Molecules is a rather small file. I am astonished. Do you have hundreds of columns? I just ran a UMAP from SkelSpheres (the largest of the vector descriptors) with 250'000 molecules, which also worked fine with just a few GB of -Xmx.

Which version and which OS do you use? On all platforms except Windows you can increase the -Xmx setting easily.

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[Message index]

		Out of memory By: Christophe on Tue, 11 March 2025 16:10
		Re: Out of memory By: nbehrnd on Wed, 12 March 2025 23:07
		Re: Out of memory By: thomas on Mon, 17 March 2025 20:52
		Re: Out of memory By: Christophe on Wed, 19 March 2025 15:49
		Re: Out of memory By: nbehrnd on Sat, 22 March 2025 17:08
		Re: Out of memory By: nbehrnd on Sat, 22 March 2025 17:26
		Re: Out of memory By: Christophe on Thu, 27 March 2025 15:29

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