openmolecules.org Forum: Bug Reports » Converting COD2020 to SDF

Home » DataWarrior » Bug Reports » Converting COD2020 to SDF

Show: Today's Messages :: Polls :: Message Navigator

Converting COD2020 to SDF [message #1195]

Thu, 28 January 2021 02:46

ghutchis
Messages: 2
Registered: January 2021
Location: Pittsburgh PA

Junior Member

I saw there was a new update to the COD data. Since I'm working with SD files mostly, I tried to export the 3D geometries.

But on my MacBook running Big Sur, it hangs with 3D export. A window pops up, but it's empty and never updates.

Export to 2D works great - no matter the options I pick in SD export.

I'm happy to help debug - I periodically get "Uncaught Exception: null" errors with the COD2020 file open.

I see a few errors in the system.log but these seem rendering-related:
Jan 27 20:19:11 Mercury DataWarrior[17344]: getattrlist failed for /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bun dle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver: #2: No such file or directory
Jan 27 20:19:11 Mercury DataWarrior[17344]: getattrlist failed for /System/Library/Frameworks/OpenGL.framework/Resources//GLRen dererFloat.bundle/GLRendererFloat: #2: No such file or directory
Jan 27 20:21:17 Mercury com.apple.xpc.launchd[1]: Coalition Cache Hit: app< application.org.openmolecules.datawarrior.122966090.12296611 6(503) > [4385]
Jan 27 20:21:18 Mercury DataWarrior[17395]: getattrlist failed for /System/Library/Extensions/AppleIntelKBLGraphicsGLDriver.bun dle/Contents/MacOS/AppleIntelKBLGraphicsGLDriver: #2: No such file or directory
Jan 27 20:21:18 Mercury DataWarrior[17395]: getattrlist failed for /System/Library/Frameworks/OpenGL.framework/Resources//GLRen dererFloat.bundle/GLRendererFloat: #2: No such file or directory

Attachment: Screen Shot 2021-01-27 at 8.31.15 PM.png
(Size: 63.90KB, Downloaded 627 times)

Report message to a moderator

[Message index]

		Converting COD2020 to SDF By: ghutchis on Thu, 28 January 2021 02:46
		Re: Converting COD2020 to SDF By: thomas on Thu, 28 January 2021 09:58
		Re: Converting COD2020 to SDF By: nbehrnd on Thu, 28 January 2021 15:36
		Re: Converting COD2020 to SDF By: ghutchis on Thu, 28 January 2021 17:00
		Re: Converting COD2020 to SDF By: nbehrnd on Thu, 28 January 2021 22:56
		Re: Converting COD2020 to SDF By: thomas on Fri, 29 January 2021 09:36
		Re: Converting COD2020 to SDF By: nbehrnd on Fri, 29 January 2021 19:59

Previous Topic:	Rearranging Columns BUG
Next Topic:	Updating Columns with Calculated Values

Goto Forum:

-=] Back to Top [=-

[ Syndicate this forum (XML) ] [

] [

]

Current Time: Mon Feb 09 09:36:00 CET 2026

Total time taken to generate the page: 0.00691 seconds