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Metrics to use for UMAP analysis with SkelSpheres descriptor [message #1725]

Thu, 08 September 2022 11:45

Christophe
Messages: 31
Registered: January 2022

Member

Hello everyone,

I'd like to use the SkelSpheres descriptor generated by DW to run a UMAP analysis.

As far as I understand, the SkelSpheres descriptor is a 1024 bins matrix. My question : Are these 1024 bins filled with binary (0/1) or counted (integers) or continues (real) data ?

I need to be sure of this answer to select the correct metric available and required to perform ordination of compounds with the new UMAP functionality provided in the last version of DW.

Thanks

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[Message index]

		Metrics to use for UMAP analysis with SkelSpheres descriptor By: Christophe on Thu, 08 September 2022 11:45
		Re: Metrics to use for UMAP analysis with SkelSpheres descriptor By: nbehrnd on Thu, 08 September 2022 22:53
		Re: Metrics to use for UMAP analysis with SkelSpheres descriptor By: Christophe on Fri, 09 September 2022 10:23

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