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Generate 2D atom coordinates gives overlapping atoms [message #1826] Tue, 31 January 2023 12:01 Go to previous message
mcmc
Messages: 23
Registered: April 2018
Junior Member
/forum/index.php?t=getfile&id=654&private=0

I have some bridged piperazines that get redrawn in a way that atoms are overlapping with the attached heterocycle upon generating 2D atom coords (which I do to superimpose the compounds in a set).
Hard to explain in words, but picture attached.
If these overlapping atoms could be avoided, that would be much appreciated.
 
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